Pittsburgh Supercomputing Center

National Resource for Biomedical Supercomputing

Carnegie Mellon University

The Salk Institute
Howard Hughes Medical Institute

National Institute of Health

National Institute of General Medical Sciences

National Science Foundation

MCell/DReAMM References


MCell Quick Reference Guide (HTML version) A comprehensive guide covering all of the MDL commands that can be used in an MCell simulation. A pdf version is available on the Downloads page.

Tutorials Theory and practice for microphysiological models simulated with MCell & DReAMM. As of January 2011, revised tutorials are underway and will include video tutorials.

Book Chapter on Model Creation with Blender Supplemental material for a 2009 book chapter entitled Rapid Creation, Monte Carlo Simulation, and Visualization of Realistic 3D Cell Models.

Introduction to Microphysiological Simulations Includes a brief summary about the pipeline of software and challenges faced in building and running simulations.

Overview of MCell A comprehensive view of the program that simulates cellular movements and reactions.